epivizrData

DOI: 10.18129/B9.bioc.epivizrData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see epivizrData.

Data Management API for epiviz interactive visualization app

Bioconductor version: 3.15

Serve data from Bioconductor Objects through a WebSocket connection.

Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrData")

 

HTML	R Script	epivizrData Usage
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Infrastructure, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 3.3 (R-3.3) (6.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase
Imports	S4Vectors, GenomicRanges, SummarizedExperiment(>= 0.2.0), OrganismDbi, GenomicFeatures, GenomeInfoDb, IRanges, ensembldb
LinkingTo
Suggests	testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI, matrixStats
SystemRequirements
Enhances
URL	http://epiviz.github.io
BugReports	https://github.com/epiviz/epivizrData/issues
Depends On Me
Imports Me	epivizr, epivizrChart, metavizr, scTreeViz
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrData_1.24.0.tar.gz
Windows Binary	epivizrData_1.24.0.zip
macOS Binary (x86_64)	epivizrData_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrData
Package Short Url	https://bioconductor.org/packages/epivizrData/
Package Downloads Report	Download Stats