XDE

DOI: 10.18129/B9.bioc.XDE    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 3.15

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

 

PDF	R Script	XDE Vignette
PDF	R Script	XdeParameterClass Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Microarray, Software
Version	2.42.0
In Bioconductor since	BioC 2.2 (R-2.7) (14.5 years)
License	LGPL-2
Depends	R (>= 2.10.0), Biobase(>= 2.5.5)
Imports	BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
LinkingTo
Suggests	MASS, RUnit
SystemRequirements
Enhances	coda
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XDE_2.42.0.tar.gz
Windows Binary	XDE_2.42.0.zip (64-bit only)
macOS Binary (x86_64)	XDE_2.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XDE
Package Short Url	https://bioconductor.org/packages/XDE/
Package Downloads Report	Download Stats