MultiBaC

DOI: 10.18129/B9.bioc.MultiBaC    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MultiBaC.

Multiomic Batch effect Correction

Bioconductor version: 3.15

MultiBaC is a strategy to correct batch effects from multiomic datasets distributed across different labs or data acquisition events. MultiBaC is the first Batch effect correction algorithm that dealing with batch effect correction in multiomics datasets. MultiBaC is able to remove batch effects across different omics generated within separate batches provided that at least one common omic data type is included in all the batches considered.

Author: person("Manuel", "Ugidos", email = "manuelugidos@gmail.com"), person("Sonia", "Tarazona", email = "sotacam@gmail.com"), person("María José", "Nueda", email = "mjnueda@ua.es")

Maintainer: The package maintainer <manuelugidos at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MultiBaC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MultiBaC")

 

HTML	R Script	MultiBaC
PDF		Reference Manual

Details

biocViews	BatchEffect, DataRepresentation, GeneExpression, PrincipalComponent, Software, StatisticalMethod, Transcription
Version	1.6.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-3
Depends
Imports	Matrix, ggplot2, MultiAssayExperiment, ropls, graphics, methods, plotrix, grDevices, pcaMethods
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, devtools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MultiBaC_1.6.0.tar.gz
Windows Binary	MultiBaC_1.6.0.zip (64-bit only)
macOS Binary (x86_64)	MultiBaC_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MultiBaC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MultiBaC
Package Short Url	https://bioconductor.org/packages/MultiBaC/
Package Downloads Report	Download Stats