KEGGREST

DOI: 10.18129/B9.bioc.KEGGREST    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see KEGGREST.

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Bioconductor version: 3.15

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Jeremy Volkening [ctb], Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")

 

HTML	R Script	Accessing the KEGG REST API
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, KEGG, Pathways, Software, ThirdPartyClient
Version	1.36.3
In Bioconductor since	BioC 2.12 (R-3.0) (9.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methods, httr, png, Biostrings
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, markdown
SystemRequirements
Enhances
URL
Depends On Me	Hiiragi2013, ROntoTools
Imports Me	ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, gage, KEGGlincs, MetaboSignal, MWASTools, NoRCE, PADOG, pairkat, pathview, RnaSeqSampleSize, SBGNview, SMITE, transomics2cytoscape, YAPSA
Suggests Me	Category, categoryCompare, GenomicRanges, globaltest, iSEEu, MLP, padma, RTopper
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGREST_1.36.3.tar.gz
Windows Binary	KEGGREST_1.36.3.zip
macOS Binary (x86_64)	KEGGREST_1.36.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/KEGGREST
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGREST
Package Short Url	https://bioconductor.org/packages/KEGGREST/
Package Downloads Report	Download Stats