ABSSeq

DOI: 10.18129/B9.bioc.ABSSeq    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: 3.15

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

 

PDF	R Script	ABSSeq
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Software
Version	1.50.0
In Bioconductor since	BioC 2.14 (R-3.1) (8.5 years)
License	GPL (>= 3)
Depends	R (>= 2.10), methods
Imports	locfit, limma
LinkingTo
Suggests	edgeR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	metaseqR2
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ABSSeq_1.50.0.tar.gz
Windows Binary	ABSSeq_1.50.0.zip
macOS Binary (x86_64)	ABSSeq_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ABSSeq
Package Short Url	https://bioconductor.org/packages/ABSSeq/
Package Downloads Report	Download Stats