Yu G (2022). Data Integration, Manipulation and Visualization of Phylogenetic Treess, 1st edition edition. Chapman and Hall/CRC.
Xu S, Li L, Luo X, Chen M, Tang W, Zhan L, Dai Z, Lam TT, Guan Y, Yu G (2022). “Ggtree: A serialized data object for visualization of a phylogenetic tree and annotation data.” iMeta, 1(4), e56. doi: 10.1002/imt2.56.
Yu G (2020). “Using ggtree to Visualize Data on Tree-Like Structures.” Current Protocols in Bioinformatics, 69(1), e96. doi: 10.1002/cpbi.96, https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.96.
Yu G, Lam TT, Zhu H, Guan Y (2018). “Two methods for mapping and visualizing associated data on phylogeny using ggtree.” Molecular Biology and Evolution, 35, 3041-3043. doi: 10.1093/molbev/msy194, https://academic.oup.com/mbe/article/35/12/3041/5142656.
Yu G, Smith D, Zhu H, Guan Y, Lam TT (2017). “ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data.” Methods in Ecology and Evolution, 8, 28-36. doi: 10.1111/2041-210X.12628, http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12628/abstract.