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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("htSeqTools")
In most cases, you don't need to download the package archive at all.
htSeqTools
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see htSeqTools.
Quality Control, Visualization and Processing for High-Throughput Sequencing data
Bioconductor version: 3.0
We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.
Author: Evarist Planet, Camille Stephan-Otto, Oscar Reina, Oscar Flores, David Rossell
Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>
Citation (from within R,
enter citation("htSeqTools")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("htSeqTools")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("htSeqTools")
| R Script | Manual for the htSeqTools library | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | QualityControl, Sequencing, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.12.2), methods, BiocGenerics(>= 0.1.0), Biobase, IRanges, methods, MASS, BSgenome, GenomeInfoDb(>= 1.1.3), GenomicRanges(>= 1.17.11) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | multicore |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | htSeqTools_1.12.0.tar.gz |
| Windows Binary | htSeqTools_1.12.0.zip |
| Mac OS X 10.6 (Snow Leopard) | htSeqTools_1.12.0.tgz |
| Mac OS X 10.9 (Mavericks) | htSeqTools_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/htSeqTools/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/htSeqTools/ |
| Package Downloads Report | Download Stats |
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