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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABarray")
In most cases, you don't need to download the package archive at all.
ABarray
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ABarray.
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Bioconductor version: 3.0
Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.
Author: Yongming Andrew Sun
Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>
Citation (from within R,
enter citation("ABarray")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABarray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABarray")
| R Script | ABarray gene expression | |
| R Script | ABarray gene expression GUI interface | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (9.5 years) |
| License | GPL |
| Depends | |
| Imports | Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils |
| LinkingTo | |
| Suggests | limma, LPE |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ABarray_1.34.0.tar.gz |
| Windows Binary | ABarray_1.34.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ABarray_1.34.0.tgz |
| Mac OS X 10.9 (Mavericks) | ABarray_1.34.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ABarray/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/ABarray/ |
| Package Downloads Report | Download Stats |
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