To cite package ‘spOccupancy’ in publications, please cite the Doser, Finley, Kéry, Zipkin (2022) paper. If using functions lfJSDM, sfJSDM, lfMsPGOcc, or sfMsPGOcc, please also cite the Doser, Finley, Banerjee (2023) paper that introduces this functionality. If using any spatially-varying coefficient function, please cite the Doser, Finley, Saunders, Kéry, Weed, Zipkin (2024) paper:

Doser JW, Finley AO, Kéry M, Zipkin EF (2022). “spOccupancy: An R package for single-species, multi-species, and integrated spatial occupancy models.” Methods in Ecology and Evolution, 13, 1670-1678. https://doi.org/10.1111/2041-210X.13897.

Doser JW, Finley AO, Banerjee S (2023). “Joint species distribution models with imperfect detection for high-dimensional spatial data.” Ecology, e4137. https://doi.org/10.1002/ecy.4137.

Doser JW, Finley AO, Saunders SP, Kéry M, Weed AS, Zipkin EF (2024). “Modeling complex species-environment relationships through spatially-varying coefficient occupancy models.” Journal of Agricultural, Biological, and Environmental Statistics. https://doi.org/10.1007/s13253-023-00595-6.

Corresponding BibTeX entries:

  @Article{,
    title = {{spOccupancy}: An R package for single-species,
      multi-species, and integrated spatial occupancy models},
    author = {Jeffrey W. Doser and Andrew O. Finley and Marc Kéry and
      Elise F. Zipkin},
    journal = {Methods in Ecology and Evolution},
    year = {2022},
    volume = {13},
    pages = {1670-1678},
    url = {https://doi.org/10.1111/2041-210X.13897},
  }

  @Article{,
    title = {Joint species distribution models with imperfect detection
      for high-dimensional spatial data},
    author = {Jeffrey W. Doser and Andrew O. Finley and Sudipto
      Banerjee},
    journal = {Ecology},
    year = {2023},
    pages = {e4137},
    url = {https://doi.org/10.1002/ecy.4137},
  }

  @Article{,
    title = {Modeling complex species-environment relationships through
      spatially-varying coefficient occupancy models},
    author = {Jeffrey W. Doser and Andrew O. Finley and Sarah P.
      Saunders and Marc Kéry and Aaron S. Weed and Elise F. Zipkin},
    journal = {Journal of Agricultural, Biological, and Environmental
      Statistics},
    year = {2024},
    url = {https://doi.org/10.1007/s13253-023-00595-6},
  }