ogrdbstats: Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics
Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
| Version: | 0.5.2 |
| Depends: | R (≥ 2.10) |
| Imports: | dplyr (≥ 0.8.3), ggplot2 (≥ 3.2.1), magrittr, tigger (≥ 0.4.0), alakazam (≥ 0.3.0), stringr (≥ 1.4.0), data.table, gridExtra (≥ 2.3), tidyr (≥ 1.0.0), stringdist (≥ 0.9.5.2), RColorBrewer (≥ 1.1-2), Biostrings (≥ 2.52.0), argparser (≥ 0.4), ComplexHeatmap, bookdown, scales |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-11-03 |
| DOI: | 10.32614/CRAN.package.ogrdbstats |
| Author: | William Lees 
[aut, cre] |
| Maintainer: | William Lees <william at lees.org.uk> |
| BugReports: | https://github.com/airr-community/ogrdbstats/issues |
| License: | CC BY-SA 4.0 |
| URL: | https://github.com/airr-community/ogrdbstats |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | ogrdbstats results |
Documentation:
| Reference manual: | ogrdbstats.pdf |
| Vignettes: |
Using ogrdbstats (source, R code) |
Downloads:
| Package source: | ogrdbstats_0.5.2.tar.gz |
| Windows binaries: | r-devel: ogrdbstats_0.5.0.zip, r-release: ogrdbstats_0.5.2.zip, r-oldrel: ogrdbstats_0.5.2.zip |
| macOS binaries: | r-release (arm64): ogrdbstats_0.5.2.tgz, r-oldrel (arm64): ogrdbstats_0.5.2.tgz, r-release (x86_64): ogrdbstats_0.5.2.tgz, r-oldrel (x86_64): ogrdbstats_0.5.2.tgz |
| Old sources: | ogrdbstats archive |
Linking:
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