tinytable
,
parameters
, and insight
dependencies.coef_rename()
gets a poly=TRUE
argument to
rename poly(x, 2)
-style coefficients. Thanks to @mccarthy-m-g for code
contribution #778.get_gof()
: logLik
column converted to
numeric for consistent types. Issue 649 reported on the
mice
Github.kableExtra
update the siunitx
commands for
d
columns.kableExtra
escapes footnotes in HTML when
output="kableExtra")
. Thanks to @dmurdoch and @michaelherndon97 for report
#793.fmt_equivalence()
function to implement the
rounding suggestion of Astier & Wolak (2024). Thanks to Nicolas
Astier for code prototype.datasummary_*()
tables. No change in behavior. Thanks to @fkohrt for report #804.Bugs:
datasummary_*()
functions can be called as arguments in
another datasummary_*()
arguments, like
add_columns
. Thanks to @mronkko for report #799caption
instead of
title
. Inconsistency with respect to
tinytable
.title
argument.htest
workaround.Bugs:
datasummary_correlation()
respects the
escape
argument. Issue #772.datasummary_correlation()
supports
data.table
objects. Issue #771.New:
modelsummary()
gets a gof_function
argument which accepts functions to extract custom information from
models.flextable
: Support spanning column headersdatasummary_correlation()
gets a star
argument.datasummary_correlation()
accepts objects produced by
the correlation
package.datasummary_balance()
: formula
can now
include variables on the left-hand side to indicate the subset of
columns to summarize:
datasummary_balance(mpg + hp ~ am, data = mtcars)
Thanks to
@etiennebacher
for feature request #751.tinytable
0.3.0Bugs:
escape
argument not respected in
datasummary_df()
. Thanks to @adamaltmejd for report #740datasummary_correlation()
supports
data.table
. Thanks to volatilehead on Twitter for report
#737.estimate
argument when using shape and
statistics are horizontal. Thanks to @iago-pssjd for report #745.datasummary()
. Thanks to @marklhc for report #752.coef_map
does not work when there is a
group
. Thanks to @mccarthy-m-g for report #757.kableExtra
: fix spanning column headers when using the
shape
argument.tinytable
output. Thanks toMAJOR BREAKING CHANGE: The default output format is now
tinytable
instead of kableExtra
. Learn more
about tinytable
here:
https://vincentarelbundock.github.io/tinytable/
To revert to the previous behavior persistently, users can call:
library(modelsummary) config_modelsummary(factory_default = “kableExtra”)
Other breaking changes:
statistic_override
argument was replaced by
vcov
over 1 year ago, with appropriate deprecation
warnings. It is now fully removed.group
argument was replaced by shape
several releases ago. It is now fully removed.datasummary_skim()
tinytable
backend. This allows a lot of code simplification and more
customization.type
and output
is
switched for consistency with other functions.histogram
argument is deprecated.New features:
datasummary_skim()
:
type="all"
by default to display both numeric and
categorical variables in a single table with distinct panels. This
feature is only available with the tinytable
backend
(default).by
argument allows summarizing numeric variables by
group.fun_numeric
argument accepts a list of functions to
control the summary columns.modelsummary()
:
statistic
and estimate
can be specified as
named vectors to control the names of statistics when displayed in
different columns using the shape
argument. (Thanks to
@mps9506 for bug
report #722)modelsummary(panels, shape = "cbind")
automatically
adds column-spanning labels when panels
is a named nested
list of models.config_modelsummary()
gets a
startup_message
argument to silence the startup message
persistently.Bug fixes:
modelplot()
calls. Thanks to @iago-pssjd for the report and @florence-laflamme for the
fix.tinytable
supports histograms in
datasummary_skim()
config_modelsummary()
supports tinytable
factory.tinytable
package as an output format
(“factory”): https://vincentarelbundock.github.io/tinytable/md
output format is recognized.options(modelsummary_factory_default)
is respected,
even in qmd->md documents.Bugs:
I()
operator in
formulas. Issue #693.Misc:
shape
groups are removed
automatically for cleaner labels.Bugs:
kableExtra
. Issue #669.New:
Typst
output, with auto-detection
in Quarto documents.strip
argument in dvnames
.s.value
statistic is now available whenever
p.value
is available. See Greenland (2019).datasummary_skim()
now includes histograms in
gt
tables.Bugs:
furrr
generated errors for some models.
Thanks to @sammo3182 for Issue #647.New:
fmt_sci()
can now be used in the fmt
argument for rounding with scientific notation.Bugs:
add_rows
with
shape="rbind"
. Thanks to @lrose1 for Report #626.shape
and grouped
estimates. Thanks to @iago-pssjd for Report #631.coef_rename=TRUE
bug with grouped estimates. Thanks to
@iago-pssjd for
Report #631.parameters
meant that
vcov
was no longer used for confidence intervals.kableExtra
. Recommends an
additional install for other formats.config_modelsummary(factory_default = "gt")
shape = "rcollapse"
and
shape = "rbind"
glance_custom()
can drop GOF by assigning
NA
:
https://stackoverflow.com/questions/75215355/assigning-different-coefficient-names-and-goodness-of-fit-statistics-to-differenstatistic
is not available,
modelsummary
prints an empty cell instead of returning an
error.title
even when
escape=TRUE
fixest_multi
objects supported.options(modelsummary_future = FALSE)
disables
future
parallelism.Bug fixes:
statistic=NULL
is now respected when
shape="rbind"
. Thanks to Panos Mavros for report #620.get_estimates()
supports vcov
string
shortcuts and formulas. Thanks to @ethans-carl for report #605.situnix
in
header automatically for decimal alignement with
align="ddd"
escape
is now respected by modelsummary
with shape="rbind"
. Thanks to @chickymonkeys for report #622.Breaking change:
modelsummary()
has
changed from “Model 1” to “(1)”. The benefits are: labels are no longer
in English by default; use less horizontal space; eliminate the “Model”
redundancy. Unfortunately, this could break code in some edge cases
where users rely on column names to manipulate tables. The old behavior
can be restored by calling:
options(modelsummary_model_labels="model")
New features:
shape="rbind"
to stack multiple regression tables and
create “panels” with labelled groups of models.fmt
: new helper functions for different formatting
styles
fmt = fmt_decimal(2)
: decimal digitsfmt = fmt_decimal(digits = 2, pdigits = 4)
: decimal
digits with p value-specific settingfmt = fmt_sprintf("%.3f")
: sprintf()
decimalfmt = fmt_sprintf("%.3e")
: sprintf()
scientificfmt = fmt_significant(3)
: significant digitsfmt = fmt_statistic("estimate" = 2, "std.error" = 3)
:
statistic-specific formattingfmt = fmt_term("(Intercept)" = 2, "hp" = 3)
:
term-specific formattingfmt = fmt_identity()
: raw valuesmodelsummary
,
such as Roman Numerals or letters in parentheses.
options(modelsummary_model_labels = "roman")
modelplot(draw = FALSE)
now returns a
p.value
column. This allows conditional aesthetics (see the
modelplot
vignette).marginaleffects
package.Bugs:
fixest
models returns useless “group.x” and
“group.y” columns. Isse #591. Thanks to Adam Altmejd for the
report.Breaking change:
shape
and output="dataframe"
arguments, there always used to be a group
column. Now,
this column has the same name as the variable in the shape
formula (“response”, “component”, etc.).New features:
shape
can include multiple groups.coef_rename
can be an unnamed vector of length equal to
the number of terms in the final table, obtained after
coef_map
and coef_omit
are applied and models
are merged.coef_omit
accepts numeric indices. Positive values:
coefficients to omit. Negative values: coefficients to keep.datasummary_skim
: Increased maximum number of variables
to 250.Bug fixes:
Breaking change:
siunitx
version 3.0.25 LaTeX package.title
argument now respects the escape
argument for all kableExtra
output formats. This can break
tables in which users manually escaped titles.New features:
align
argument for all output
formats.
modelsummary(mod, align = "ld")
update_modelsummary()
function makes it easy to
install the dev versions of modelsummary
and its
dependencies (mostly useful for Vincent and people who report
bugs).haven
labels in
modelsummary()
, datasummary()
,
datasummary_skim()
output = "filename.csv"
output = "filename.xlsx"
add_columns
argument supported in
modelsummary()
datasummary_balance
supports the stars
argument.align = "d"
column.Bug fixes:
shape
argument accepts interactions with the colon “:”
character. This combines two columns into one, which can be useful to
display terms and group names in a single column.parallel::mclapply
. See
?modelsummary
modelsummary
no longer computes confidence intervals
when not necessary, which can save some time. Also see:
conf_level=NULL
This first major release accompanies the publication of an article in the Journal of Statistical Software:
Arel-Bundock, Vincent (2022). “modelsummary: Data and Model Summaries in R.” Journal of Statistical Software, 103(1), 1-23. doi:10.18637/jss.v103.i01 https://doi.org/10.18637/jss.v103.i01.’
If you like modelsummary
, please cite the JSS article
and tell your friends about it.
Minor changes:
gof_map="all"
includes all available statistics.
gof_map="none"
excludes all statistics.diagnostic=NULL
and test=NULL
by default for
speed.Breaking changes:
modelsummary_wide
is no longer available. Use the
shape
argument of modelsummary
instead.modelsummary
now uses the easystats
packages (performance
and parameters
) to
extract estimates and goodness-of-fit statistics instead of
broom
. This can be reverted by setting a global option:
options(modelsummary_get="broom")
. This change aims to (1)
increase consistency across models, (2) improve the developers’ ability
to push bug fixes upstream when necessary, and (3) improve support for
mixed effects, bayesian, and GAM models. The two main drawbacks are: (a)
The set of printed statistics may be slightly different from previous
versions of modelsummary
(b) The group identifiers used in
the shape
formula will also be different for certain models
(e.g., in nnet::multinom
, y.level
becomes
response
).New features:
shape
argument accepts a formula and can reshape
information in myriad ways. Deprecates the group
argument.
Examples:
~ statistic
: statistics are shown horizontally in
distinct columns.model ~ term
: models in rows and terms in columns.term + y.level + statistic ~ model
: grouped
coefficients for multivariate outcome in
nnet::multinom
y.level ~ model
: partial match is the same as the
previous formulafmt
:
modelsummary(mod, fmt = list(estimate = 2, std.error = 1, rmse = 4))
glue
to apply functions to numeric values by
setting fmt = NULL
. Example:
modelsummary(model, fmt = NULL, estimate = "{log(estimate)}")
Bug fixes:
group_map
rename issuelm
models.datasummary_skim
output to jpg should now worksescape
fixesexponentiate
argument for
modelsummary()
and modelplot()
gof_map
accepts a vector such as
c("rmse", "nobs", "r.squared")
rlang
dependencydatasummary_balance
:
~ 1
as a formula to summarize all data.Misc:
lm
modelsummary
:
vcov
strings like HC1
and
Robust
are now case-insensitivegof_map
now accepts a data.frame or tibble with a
fmt
list-column which includes functions (see Examples in
docs)R2
is no longer computed by default for bayesian and
mixed effects models. An informative one-time warning is printed about
the metrics
argument.datasummary_skim
:
kableExtra
factory:
col.names
argument can now be passed to
kableExtra::kbl
through the … ellipsis.Misc:
output = "github_document"
is now supportedmodelsummary
:
vcov
argumentdatasummary_balance
:
Misc:
modelsummary
:
vcov
argument handling for fixest
models (#357 by @grantmcdermott)fixest::i()
variables and interactions
(#361 by @grantmcdermott)datasummary_correlation
:
add_rows
and add_columns
arguments are now
available here.Misc:
modelsummary_factory_default
,
modelsummary_factory_html
, etc.intersect
Bug fixes:
datasummary_balance
: escape variable names when
escape=TRUE
Breaking change:
dcolumn
for dot-aligned columns is
deprecated. Use “d” in the align
argument instead.Other changes:
\num{}
function from the siunitx
package by default. This produces
much nicer formatting. This can be disabled with a global option. See
?modelsummary
align
argument accepts a “d” column for
dot-alignment using the siunitx
LaTeX package:
align="ldd"
.escape
argument in most table-building
functions.threeparttable=TRUE
argument
through ...
tidyr
modelsummary
:
group
: The order of terms in the formula determines the
order of rows/columnsmodelsummary_wide
:
modelplot
:
datasummary_crosstab
:
statistic=NULL
produces a very basic crosstabdatasummary_crosstab
:
modelsummary
:
options("modelsummary_stars_note" = FALSE)
longtable=TRUE
works for LaTeX outputcoef_map
or coef_rename
are used.group = model ~ term + group
is now supported.datasummary_skim
:
datasummary_skim("categorical")
keeps NA
by default. Users can convert variables to factors before calling
datasummary_skim
to exclude NA
.Other:
modelsummary(model1, model2)
gt
titles use the new caption
argument in
the gt 0.3.0
functionBreaking change:
stars=TRUE
have been
updated to be consistent with the default output from base R (e.g., in
summary.lm). The new significance thresholds are: “+” p < 0.1, “”
p < 0.05, ”” p < 0.01, ”” p < 0.001datasummary_crosstab
:
datasummary
:
N
is smart enough to return either the number of
elements in a subset or the number of non-missing observations in a
variabledatasummary_balance
:
NA
s in factor variables by default. Users can
convert their variables with the factor()
function to omit
NA
s automatically.modelsummary
:
get_gof
(glance
) is now
optional.sandwich
, which allows things
like:
modelsummary(model, vcov = "bootstrap", R = 1000, cluster = "firm")
Other:
output="jupyter"
modelsummary
:
modelsummary
: group
and
group_map
for grouped parameters (e.g., outcome levels in
multinomial logit or components of gamlss model).dvnames()
makes it easy to get dependent variable
column titles (thanks to @NickCH-K)output="modelsummary_list"
to save a lightweight
list-based representation of the table which can be saved and fed to
modelsummary
once more to get a full table.vcov
adds a row to note the type of standard
errors.modelsummary
accepts a single model with multiple
vcov
s.get_gof
forwards … to
model_performance
coef_map
accepts unnamed vectors for easy
subsettingfixest::fixest_multi
supportoptions(modelsummary_get)
to set the order of
extraction functions to use under the hood (broom vs. easystats
vs. all)metrics
argument of
performance::model_performance
is available via
modelsummary
’s … ellipsis to limit the GOF statistics in
Bayesian models.estimate="{estimate}{stars}"
gt
by setting
options(modelsummary_factory_html="gt")
datasummary_correlation
:
...
forwarddatasummary_correlation_format
datasummary_correlation
’s method
argument
accepts functions and “pearspear” (thanks to @joachim-gassen)datasummary
:
datasummary
functions and rounding
accept
…, big.mark, etc.datasummary_skim
:
Bug fixes and lints
tidy_custom
allows partial term matchesmodelsummary(coef_rename)
accepts functionscoef_rename
for use in
modelsummary(coef_rename=coef_rename)
modelplot
accepts add_rows
to add
reference categoriesstatistic_override
becomes vcov
estimate
and
statistic
extract
is no longer
documented.threeparttable
, colors, and many other
LaTeX optionspkgdown
website and doc improvementsmitools
tidiers