heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Create interactive cluster 'heatmaps' that can be saved as a stand-
alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and
available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to
show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical
method for visualizing high-dimensional data, in which a table of numbers
are encoded as a grid of colored cells. The rows and columns of the matrix
are ordered to highlight patterns and are often accompanied by 'dendrograms'.
'Heatmaps' are used in many fields for visualizing observations, correlations,
missing values patterns, and more. Interactive 'heatmaps' allow the inspection
of specific value by hovering the mouse over a cell, as well as zooming into
a region of the 'heatmap' by dragging a rectangle around the relevant area.
This work is based on the 'ggplot2' and 'plotly.js' engine. It produces
similar 'heatmaps' to 'heatmap.2' with the advantage of speed
('plotly.js' is able to handle larger size matrix), the ability to zoom from
the 'dendrogram' panes, and the placing of factor variables in the sides of the
'heatmap'.
| Version: |
1.5.0 |
| Depends: |
R (≥ 3.0.0), plotly (≥ 4.7.1), viridis |
| Imports: |
ggplot2 (≥ 2.2.0), dendextend (≥ 1.12.0), magrittr (≥
1.0.1), reshape2, scales, seriation, utils, stats, grDevices, methods, colorspace, RColorBrewer, htmlwidgets, webshot, assertthat, egg |
| Suggests: |
knitr, covr, gplots, tidyselect, rmarkdown, testthat |
| Published: |
2023-10-06 |
| DOI: |
10.32614/CRAN.package.heatmaply |
| Author: |
Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Alan O'Callaghan [aut] (https://github.com/Alanocallaghan),
Jonathan Sidi [ctb] (https://github.com/yonicd),
Jaehyun Joo [ctb] (https://github.com/jaehyunjoo),
Yoav Benjamini [ths] |
| Maintainer: |
Tal Galili <tal.galili at gmail.com> |
| BugReports: |
https://github.com/talgalili/heatmaply/issues |
| License: |
GPL-2 | GPL-3 |
| URL: |
https://talgalili.github.io/heatmaply/,
https://cran.r-project.org/package=heatmaply,
https://github.com/talgalili/heatmaply/,
https://www.r-statistics.com/tag/heatmaply/ |
| NeedsCompilation: |
no |
| Citation: |
heatmaply citation info |
| Materials: |
README NEWS ChangeLog |
| In views: |
DynamicVisualizations |
| CRAN checks: |
heatmaply results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
shinyHeatmaply |
| Reverse imports: |
amerifluxr, BayesianNetwork, CALANGO, dar, debrowser, DegNorm, DiscoRhythm, GEOexplorer, ideal, latentcor, metaseqR2, MiMIR, neatmaps, OUTRIDER, pcaExplorer, qmtools, rnmamod, scTensor, shinyepico, SpliceWiz, wilson |
| Reverse suggests: |
CNVScope, dendextend, EpiCompare, protti, rcellminer, rrvgo |
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=heatmaply
to link to this page.