Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
| Version: |
1.7.3 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
ALDEx2, aplot, DESeq2, dplyr, edgeR, GGally, ggplot2, grid, ggh4x, lefser, limma, Maaslin2, metagenomeSeq, MicrobiomeStat, readr, SummarizedExperiment, tibble, tidyr, ggprism, patchwork, circlize |
| Suggests: |
Biobase, KEGGREST, ComplexHeatmap, ggplotify, BiocGenerics, magrittr, utils, knitr, rmarkdown |
| Published: |
2023-11-08 |
| DOI: |
10.32614/CRAN.package.ggpicrust2 |
| Author: |
Chen Yang [aut, cre],
Liangliang Zhang [aut] |
| Maintainer: |
Chen Yang <cafferychen7850 at gmail.com> |
| BugReports: |
https://github.com/cafferychen777/ggpicrust2/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/cafferychen777/ggpicrust2 |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
ggpicrust2 results [issues need fixing before 2024-11-25] |