Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>, Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.
| Version: | 0.6-6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | MCMCpack, graphics, stats, methods |
| Suggests: | markdown, knitr |
| Published: | 2021-12-09 |
| DOI: | 10.32614/CRAN.package.coarseDataTools |
| Author: | Nicholas G. Reich [aut, cre], Justin Lessler [aut], Andrew Azman [aut], Zhian N. Kamvar [ctb] |
| Maintainer: | Nicholas G. Reich <nick at umass.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://cran.r-project.org/package=coarseDataTools |
| NeedsCompilation: | no |
| Citation: | coarseDataTools citation info |
| Materials: | README ChangeLog |
| In views: | Epidemiology, Survival |
| CRAN checks: | coarseDataTools results |
| Reference manual: | coarseDataTools.pdf |
| Vignettes: |
Example for estimating the case fatality ratio |
| Package source: | coarseDataTools_0.6-6.tar.gz |
| Windows binaries: | r-devel: coarseDataTools_0.6-6.zip, r-release: coarseDataTools_0.6-6.zip, r-oldrel: coarseDataTools_0.6-6.zip |
| macOS binaries: | r-release (arm64): coarseDataTools_0.6-6.tgz, r-oldrel (arm64): coarseDataTools_0.6-6.tgz, r-release (x86_64): coarseDataTools_0.6-6.tgz, r-oldrel (x86_64): coarseDataTools_0.6-6.tgz |
| Old sources: | coarseDataTools archive |
| Reverse imports: | EpiEstim |
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