stat_locs object for active stations in the NERR
system.Added keep_qaqcstatus argument to
import_local() to retain historical and
provisionalplus columns in the output
Added unit testing for most functions
getSunlightTimes() function from suncalc package to
estimate metabolic days in metab_day() functionAdded fill argument to plot_summary as
option to fill missing values with long term monthly averages or linear
interpolation
Added base_size argument for global text size in
plot_summary
Fix to annual anomalies in plot_summary as average
of monthly sums
Enhancement to qaqc to work if angle brackets not
included in qualifier codes
Only required functions from data.table dependency imported
Fix to map_reserve function for updates to
ggmap
Added Pacific/Honolulu time zone and 'hee' site code
to time_vec function for He’eia reserve
Added colsleft, colsmid, and
colsright arguments to plot_summary for
separate colors on left, mid, right portions of plot
URL fix to metab_day documentation
Each function is now in its own file instead of grouped by categories (thanks Kim!)
Fix to gas exchange estimate for correct units in
ecometab function
Fixing broken URLs in vignette and package documentation
Added collMethd argument to
import_local function to specify diel or standard monthly
sampling for nutrient samples
Minor fix to swmpr function if trailing white spaces
found at end of each qaqc column
Minor fix to help files if searching by concept, e.g.,
help.search('analyze', package = "SWMPr")
Added informative error message if IP address not registered for using CDMO web services
Added plot_quants function to evaluate trends
relative to long-term averages
All numeric columns are forced to numeric atomic vectors on input
Documentation updated to indicate a return value in the
calckl function
Fixed bug with comb function if differ argument is
incorrect
Added option in qaqc to included additional columns
specifying censored values (via cens_id function)
Added plot_wind function for wind roses from weather
data
Fixes to decomp_cj function, including grandmean
back to output
Added point and line options for overplot
Trailing whitespace in qaqc columns are removed in
swmpr argument
Removed dependency to deprecated wq package
Safety stop in import_local if data type not in
station code
Removed use of setstep function in
ecometab that caused less precise results
Fixed bug with sanity check of depth_val argument in
ecometab
Fixed bug with metab_day if original time series was
not continuous
Default S3 method added to ecometab
parser now uses xmlTreeParse making CDMO
retrieval functions much fasterimport_localqaqc function that treated integer flags
the same regardless of signDefault method for smoother was added,
aggremetab can now use moving window smoothing with
appropriate changes in plot_metab
timestep argument in
setstep. The default value for differ was
causing an error.comb that caused
error if the input was not a list of objects to combine.comb added so it can be used with
non-swmpr objects.setstep added so it can be used with
non-swmpr objects.decomp added so it can be used with
non-swmpr objects.decomp_cj added so it can be used
with non-swmpr objects.overplot function added that allows plotting of
multiple variables on the sample plot with different y-axes.qaqc function now uses string matching to keep flags.
This is a more flexible approach to keeping desired flags, the previous
version used hard coded integers for each flag.plot_summary that returned an error if a
cumulative precipitation column was present. This is no longer collected
by SWMP but older datasets may have have it included.import_local to handle more flexible
text input for the station code. Function doesn’t break if the file
extension is included and the date is stripped from the station
attribute of the imported swmpr object.import_local function can now import files directly
from a zipped folder, i.e., it doesn’t have to be decompressed
first.
SWMPr functions can be searched by concepts - retrieve, organize,
analyse, e.g.,
help.search('retrieve', package = 'SWMPr')
single_param now retreives more than 100 records by
using all_params_dtrng internally.all_params now retreives more than 100 records by using
all_params_dtrng internally.all_params_dtrng function now retrieves more than 1000
records from the CDMO. In theory, all records for a station can be
retrieved but this would take a long time.timestep argument in the setstep function,
e.g., "hours". See the help file.