Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.
| Version: | 0.0.5 |
| Depends: | methods, utils, grDevices (≥ 3.0.0), graphics (≥ 3.0.0), R (≥ 3.3.0) |
| Imports: | ggplot2, sf (≥ 0.6.3), stats (≥ 3.0.2), Biostrings (≥ 2.0.0) |
| Suggests: | testthat (≥ 2.0) |
| Published: | 2019-06-14 |
| DOI: | 10.32614/CRAN.package.SMITIDstruct |
| Author: | Jean-Francois Rey [aut, cre] |
| Maintainer: | Jean-Francois Rey <jean-francois.rey at inra.fr> |
| BugReports: | https://gitlab.paca.inra.fr/SMITID/structR/issues |
| License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://informatique-mia.inra.fr/biosp/anr-smitid-project, https://gitlab.paca.inra.fr/SMITID/structR |
| NeedsCompilation: | no |
| CRAN checks: | SMITIDstruct results |
| Reference manual: | SMITIDstruct.pdf |
| Package source: | SMITIDstruct_0.0.5.tar.gz |
| Windows binaries: | r-devel: SMITIDstruct_0.0.5.zip, r-release: SMITIDstruct_0.0.5.zip, r-oldrel: SMITIDstruct_0.0.5.zip |
| macOS binaries: | r-release (arm64): SMITIDstruct_0.0.5.tgz, r-oldrel (arm64): SMITIDstruct_0.0.5.tgz, r-release (x86_64): SMITIDstruct_0.0.5.tgz, r-oldrel (x86_64): SMITIDstruct_0.0.5.tgz |
| Old sources: | SMITIDstruct archive |
| Reverse suggests: | SMITIDvisu |
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