MetaNet: Network Analysis for Omics Data
Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.
| Version: |
0.1.2 |
| Depends: |
R (≥ 4.1.0), igraph (≥ 1.3.5) |
| Imports: |
graphics, dplyr, ggplot2 (≥ 3.2.0), ggnewscale, ggrepel, RColorBrewer, grDevices, magrittr, reshape2, stats, tibble, utils, pcutils (≥ 0.2.5), rlang |
| Suggests: |
pheatmap, vegan, stringr, foreach, doSNOW, snow, knitr, rmarkdown, prettydoc, Hmisc, gifski, ggraph, networkD3, ggpmisc, ggtree, treeio, circlize, ggpubr |
| Published: |
2024-03-25 |
| DOI: |
10.32614/CRAN.package.MetaNet |
| Author: |
Chen Peng  [aut,
cre] |
| Maintainer: |
Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: |
https://github.com/Asa12138/MetaNet/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/Asa12138/MetaNet |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
MetaNet results |
Documentation:
Downloads:
Reverse dependencies:
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