EpiTest: Test for Gene x Gene Interactions in Bi-Parental Populations
Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>, that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | dplyr, ggplot2, ggrepel, magrittr, MM4LMM, purrr, stringr, utils |
| Published: | 2022-12-20 |
| DOI: | 10.32614/CRAN.package.EpiTest |
| Author: | Simon Rio  [aut,
cre],
Tristan Mary-Huard
[aut] |
| Maintainer: | Simon Rio <simon.rio at cirad.fr> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | EpiTest results |
Documentation:
| Reference manual: | EpiTest.pdf |
Downloads:
| Package source: | EpiTest_1.0.0.tar.gz |
| Windows binaries: | r-devel: EpiTest_1.0.0.zip, r-release: EpiTest_1.0.0.zip, r-oldrel: EpiTest_1.0.0.zip |
| macOS binaries: | r-release (arm64): EpiTest_1.0.0.tgz, r-oldrel (arm64): EpiTest_1.0.0.tgz, r-release (x86_64): EpiTest_1.0.0.tgz, r-oldrel (x86_64): EpiTest_1.0.0.tgz |
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