Bug Fixes
- Updated Readme file
- Fixes to new maxent interface
New features
- Updated the entire package to use terra instead of raster
- Numerous other bug fixes and behind-the-scenes improvements
Bug Fixes
- Fixed issues with background buffer when mask and points didn’t overlap
- Added citation for breadth measurements
Bug Fixes
- Permutations for background tests were selecting presences from both species’ ranges, leading to incorrect values for hypothesis tests.
Bug Fixes
- Raes and ter Steege-style tests were returning incorrect evaluate objects, although plots and p values were correct
- test.prop = “block” wasn’t working correctly
Enhancements
- Suppressing maxent startup messages by default
- Added support for bias layers to modeling functions
- Added check.env function to homogenize raster stacks so NAs propagate across layers
Enhancements
- Brought up to date for new spatstat changes
- Removed ppmlasso until it is brought back on CRAN
Enhancements
- Added a new general-purpose function for making background layers from point data. It can do both circular buffers and buffered convex hulls, and can return points, a polygon, or a raster. Converted the existing background buffer functions to just call this one, and will eventually deprecate the single-application functions.
- Added ability to select which corner you want for “block” validation.
- Added a function called multi.variogram which takes a raster stack, builds a variogram for each layer, and then plots the gamma for each variable as a function of distance, scaled by the maximum gama for that variable. This allows users to get some idea of the level of spatial autocorrelation in each predictor variable.
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Enhancements
- Added variable importance tests via interface with the vip package
- Added clamping for the predict functions, including plots of where clamping is happening
- Added clamping for model construction functions, with a TRUE/FALSE switch defaulting to TRUE
- Changed naming conventions for predict functions so that the suitability raster is in the $suitability slot, just as with modeling functions
- Added progress bars for a lot of tests
- Added “verbose” option for a lot of functions, defaulting to FALSE
Bug fixes
- Fixed interactive.plot generic and moved the function to its own file to make it easier to extend
- Temporarily suppressing some warnings coming out of leaflet that are being produced by the recent rgdal changes
- Fixed background sampling code to resample when necessary
- Changed enmtools.ranger demo code to actually use ranger instead of rf
- Fixed code for calculating p values for some of the hypothesis tests, the old code was getting wrong answers when there were repeated values