CeRNASeek: Identification and Analysis of ceRNA Regulation

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.

Version:	2.1.3
Depends:	R (≥ 3.1.0)
Imports:	gtools , igraph, survival, parallel
Published:	2020-04-29
DOI:	10.32614/CRAN.package.CeRNASeek
Author:	Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer:	Mengying Zhang <zhangmengying at hrbmu.edu.cn>
License:	GPL-3
NeedsCompilation:	no
In views:	Omics
CRAN checks:	CeRNASeek results

Documentation:

Reference manual:

CeRNASeek.pdf

Downloads:

Package source:	CeRNASeek_2.1.3.tar.gz
Windows binaries:	r-devel: CeRNASeek_2.1.3.zip, r-release: CeRNASeek_2.1.3.zip, r-oldrel: CeRNASeek_2.1.3.zip
macOS binaries:	r-release (arm64): CeRNASeek_2.1.3.tgz, r-oldrel (arm64): CeRNASeek_2.1.3.tgz, r-release (x86_64): CeRNASeek_2.1.3.tgz, r-oldrel (x86_64): CeRNASeek_2.1.3.tgz
Old sources:	CeRNASeek archive

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